Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubp1Q811S7 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubp1Q811S7 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Ubp1Q811S7 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Gm10812-201ENSMUST00000099864 546 ntBASIC17.31■□□□□ 0.36
Ubp1Q811S7 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.31■□□□□ 0.36
Ubp1Q811S7 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Ubp1Q811S7 Idnk-204ENSMUST00000226010 1898 ntBASIC17.31■□□□□ 0.36
Ubp1Q811S7 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Gm43183-201ENSMUST00000200632 547 ntBASIC17.3■□□□□ 0.36
Ubp1Q811S7 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.3■□□□□ 0.36
Ubp1Q811S7 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubp1Q811S7 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.29■□□□□ 0.36
Ubp1Q811S7 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ubp1Q811S7 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Gm37292-201ENSMUST00000192062 758 ntBASIC17.28■□□□□ 0.36
Ubp1Q811S7 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubp1Q811S7 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.27■□□□□ 0.36
Ubp1Q811S7 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ubp1Q811S7 Gm29791-202ENSMUST00000207888 369 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms