Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim56Q80VI1 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim56Q80VI1 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim56Q80VI1 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim56Q80VI1 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim56Q80VI1 Odf3b-204ENSMUST00000227834 930 ntBASIC20.77■□□□□ 0.92
Trim56Q80VI1 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim56Q80VI1 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim56Q80VI1 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Trim56Q80VI1 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC20.76■□□□□ 0.91
Trim56Q80VI1 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim56Q80VI1 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Gm15565-201ENSMUST00000118890 427 ntBASIC20.75■□□□□ 0.91
Trim56Q80VI1 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Gm24841-201ENSMUST00000158676 357 ntBASIC20.75■□□□□ 0.91
Trim56Q80VI1 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim56Q80VI1 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.74■□□□□ 0.91
Trim56Q80VI1 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.74■□□□□ 0.91
Trim56Q80VI1 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim56Q80VI1 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim56Q80VI1 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim56Q80VI1 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Gm38027-201ENSMUST00000192315 235 ntBASIC20.72■□□□□ 0.91
Trim56Q80VI1 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.72■□□□□ 0.91
Trim56Q80VI1 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.72■□□□□ 0.91
Trim56Q80VI1 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim56Q80VI1 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Trim56Q80VI1 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms