Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC17.14■□□□□ 0.33
Ubfd1Q78JW9 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ubfd1Q78JW9 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Gm7889-201ENSMUST00000185591 958 ntBASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ubfd1Q78JW9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ubfd1Q78JW9 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Fst-202ENSMUST00000223640 2612 ntBASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ubfd1Q78JW9 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 AC123834.2-201ENSMUST00000224038 2340 ntBASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.1■□□□□ 0.33
Ubfd1Q78JW9 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ubfd1Q78JW9 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ubfd1Q78JW9 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ubfd1Q78JW9 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.08■□□□□ 0.33
Ubfd1Q78JW9 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ubfd1Q78JW9 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ubfd1Q78JW9 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ubfd1Q78JW9 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ubfd1Q78JW9 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms