Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Gm13158-201ENSMUST00000122007 736 ntBASIC19.71■□□□□ 0.75
Usp49Q6P9L4 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp49Q6P9L4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp49Q6P9L4 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Trmt13-210ENSMUST00000198454 880 ntBASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Gm42545-201ENSMUST00000202755 922 ntBASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp49Q6P9L4 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp49Q6P9L4 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Gm18025-201ENSMUST00000221733 862 ntBASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp49Q6P9L4 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Gm10653-202ENSMUST00000139570 835 ntBASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp49Q6P9L4 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms