Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col7a1Q63870 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Col7a1Q63870 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.68□□□□□ -0.06
Col7a1Q63870 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
Col7a1Q63870 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Col7a1Q63870 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col7a1Q63870 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC14.67□□□□□ -0.06
Col7a1Q63870 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Col7a1Q63870 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.67□□□□□ -0.06
Col7a1Q63870 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.67□□□□□ -0.06
Col7a1Q63870 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
Col7a1Q63870 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Gm27397-201ENSMUST00000184997 107 ntBASIC14.67□□□□□ -0.06
Col7a1Q63870 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Col7a1Q63870 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col7a1Q63870 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.66□□□□□ -0.06
Col7a1Q63870 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Gm26308-201ENSMUST00000157768 69 ntBASIC14.66□□□□□ -0.06
Col7a1Q63870 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC14.66□□□□□ -0.06
Col7a1Q63870 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col7a1Q63870 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
Col7a1Q63870 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.65□□□□□ -0.06
Col7a1Q63870 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Col7a1Q63870 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col7a1Q63870 Gm9727-201ENSMUST00000161387 555 ntBASIC14.65□□□□□ -0.06
Col7a1Q63870 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Col7a1Q63870 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.65□□□□□ -0.06
Col7a1Q63870 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col7a1Q63870 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Col7a1Q63870 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.64□□□□□ -0.07
Col7a1Q63870 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.64□□□□□ -0.07
Col7a1Q63870 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.64□□□□□ -0.07
Col7a1Q63870 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.64□□□□□ -0.07
Col7a1Q63870 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col7a1Q63870 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col7a1Q63870 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.63□□□□□ -0.07
Col7a1Q63870 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.63□□□□□ -0.07
Col7a1Q63870 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC14.63□□□□□ -0.07
Col7a1Q63870 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Col7a1Q63870 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.63□□□□□ -0.07
Col7a1Q63870 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.63□□□□□ -0.07
Col7a1Q63870 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.63□□□□□ -0.07
Col7a1Q63870 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col7a1Q63870 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms