Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CtcfQ61164 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CtcfQ61164 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.33■□□□□ 0.69
CtcfQ61164 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CtcfQ61164 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CtcfQ61164 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.33■□□□□ 0.68
CtcfQ61164 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CtcfQ61164 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CtcfQ61164 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CtcfQ61164 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CtcfQ61164 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CtcfQ61164 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CtcfQ61164 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CtcfQ61164 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.32■□□□□ 0.68
CtcfQ61164 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CtcfQ61164 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CtcfQ61164 Gm18284-201ENSMUST00000172604 624 ntBASIC19.32■□□□□ 0.68
CtcfQ61164 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.32■□□□□ 0.68
CtcfQ61164 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CtcfQ61164 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Hivep3-201ENSMUST00000084306 2973 ntBASIC19.32■□□□□ 0.68
CtcfQ61164 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CtcfQ61164 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CtcfQ61164 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CtcfQ61164 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.31■□□□□ 0.68
CtcfQ61164 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.31■□□□□ 0.68
CtcfQ61164 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.31■□□□□ 0.68
CtcfQ61164 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CtcfQ61164 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CtcfQ61164 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.3■□□□□ 0.68
CtcfQ61164 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CtcfQ61164 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CtcfQ61164 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CtcfQ61164 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.3■□□□□ 0.68
CtcfQ61164 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.3■□□□□ 0.68
CtcfQ61164 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.3■□□□□ 0.68
CtcfQ61164 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CtcfQ61164 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
CtcfQ61164 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
CtcfQ61164 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CtcfQ61164 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CtcfQ61164 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.29■□□□□ 0.68
CtcfQ61164 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CtcfQ61164 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.29■□□□□ 0.68
CtcfQ61164 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CtcfQ61164 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.28■□□□□ 0.68
CtcfQ61164 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CtcfQ61164 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CtcfQ61164 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 8.2 ms