Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Gm6420-201ENSMUST00000193885 723 ntBASIC16.77■□□□□ 0.28
Nr1h4Q60641 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Nr1h4Q60641 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Nr1h4Q60641 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Nr1h4Q60641 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.76■□□□□ 0.27
Nr1h4Q60641 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Nr1h4Q60641 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.75■□□□□ 0.27
Nr1h4Q60641 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Nespas-201ENSMUST00000143738 1083 ntBASIC16.75■□□□□ 0.27
Nr1h4Q60641 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Nr1h4Q60641 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Nr1h4Q60641 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1h4Q60641 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms