Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm5587-201ENSMUST00000206270 674 ntBASIC20.26■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm4974-201ENSMUST00000209974 875 ntBASIC20.26■□□□□ 0.83
Ccdc88aQ5SNZ0 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm38027-201ENSMUST00000192315 235 ntBASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc88aQ5SNZ0 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm27704-201ENSMUST00000185094 107 ntBASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm29791-202ENSMUST00000207888 369 ntBASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm17661-201ENSMUST00000170317 270 ntBASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc88aQ5SNZ0 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm9013-201ENSMUST00000132939 882 ntBASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm2274-201ENSMUST00000184539 609 ntBASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc88aQ5SNZ0 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm22697-201ENSMUST00000175194 63 ntBASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.21■□□□□ 0.83
Ccdc88aQ5SNZ0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms