Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Shmt1P50431 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shmt1P50431 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.61■□□□□ 0.57
Shmt1P50431 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shmt1P50431 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shmt1P50431 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Shmt1P50431 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.61■□□□□ 0.57
Shmt1P50431 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Shmt1P50431 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shmt1P50431 Gm12085-201ENSMUST00000119263 940 ntBASIC18.61■□□□□ 0.57
Shmt1P50431 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.61■□□□□ 0.57
Shmt1P50431 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.61■□□□□ 0.57
Shmt1P50431 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.61■□□□□ 0.57
Shmt1P50431 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shmt1P50431 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.6■□□□□ 0.57
Shmt1P50431 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.6■□□□□ 0.57
Shmt1P50431 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Shmt1P50431 Gm3375-201ENSMUST00000203929 796 ntBASIC18.6■□□□□ 0.57
Shmt1P50431 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.6■□□□□ 0.57
Shmt1P50431 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shmt1P50431 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.59■□□□□ 0.57
Shmt1P50431 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Shmt1P50431 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
Shmt1P50431 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.59■□□□□ 0.57
Shmt1P50431 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.59■□□□□ 0.57
Shmt1P50431 Gm29994-201ENSMUST00000195495 1193 ntBASIC18.59■□□□□ 0.57
Shmt1P50431 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.59■□□□□ 0.57
Shmt1P50431 Timm23-208ENSMUST00000226683 750 ntBASIC18.59■□□□□ 0.57
Shmt1P50431 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Shmt1P50431 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Shmt1P50431 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shmt1P50431 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.59■□□□□ 0.57
Shmt1P50431 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Shmt1P50431 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Shmt1P50431 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Shmt1P50431 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Shmt1P50431 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Shmt1P50431 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Shmt1P50431 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Shmt1P50431 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.58■□□□□ 0.56
Shmt1P50431 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Shmt1P50431 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.58■□□□□ 0.56
Shmt1P50431 Odf3b-204ENSMUST00000227834 930 ntBASIC18.58■□□□□ 0.56
Shmt1P50431 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Shmt1P50431 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Shmt1P50431 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Shmt1P50431 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
Shmt1P50431 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Shmt1P50431 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.57■□□□□ 0.56
Shmt1P50431 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Shmt1P50431 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Shmt1P50431 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Shmt1P50431 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Shmt1P50431 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Rarb-207ENSMUST00000225921 2756 ntBASIC18.56■□□□□ 0.56
Shmt1P50431 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.56■□□□□ 0.56
Shmt1P50431 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Shmt1P50431 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.56■□□□□ 0.56
Shmt1P50431 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Shmt1P50431 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms