Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx3P48381 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Rfx3P48381 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx3P48381 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx3P48381 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx3P48381 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx3P48381 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx3P48381 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Gm15743-202ENSMUST00000182690 1901 ntBASIC15.9■□□□□ 0.14
Rfx3P48381 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Rfx3P48381 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Rfx3P48381 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Rfx3P48381 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC15.9■□□□□ 0.14
Rfx3P48381 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
Rfx3P48381 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx3P48381 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Rfx3P48381 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Rfx3P48381 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.89■□□□□ 0.13
Rfx3P48381 Gm6211-202ENSMUST00000167849 925 ntBASIC15.89■□□□□ 0.13
Rfx3P48381 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC15.89■□□□□ 0.13
Rfx3P48381 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Rfx3P48381 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC15.89■□□□□ 0.13
Rfx3P48381 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Rfx3P48381 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx3P48381 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Gm38345-201ENSMUST00000192635 1748 ntBASIC15.88■□□□□ 0.13
Rfx3P48381 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Rfx3P48381 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC15.88■□□□□ 0.13
Rfx3P48381 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Gm37563-201ENSMUST00000192580 1513 ntBASIC15.88■□□□□ 0.13
Rfx3P48381 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx3P48381 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Rfx3P48381 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Rfx3P48381 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC15.87■□□□□ 0.13
Rfx3P48381 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Rfx3P48381 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC15.87■□□□□ 0.13
Rfx3P48381 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC15.87■□□□□ 0.13
Rfx3P48381 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx3P48381 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx3P48381 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx3P48381 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx3P48381 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC15.86■□□□□ 0.13
Rfx3P48381 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Rfx3P48381 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Rfx3P48381 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx3P48381 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms