Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.36■□□□□ 0.69
Msh3P13705 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.35■□□□□ 0.69
Msh3P13705 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.35■□□□□ 0.69
Msh3P13705 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.35■□□□□ 0.69
Msh3P13705 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.35■□□□□ 0.69
Msh3P13705 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Msh3P13705 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh3P13705 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Msh3P13705 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.34■□□□□ 0.69
Msh3P13705 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh3P13705 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Msh3P13705 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh3P13705 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.34■□□□□ 0.69
Msh3P13705 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.34■□□□□ 0.69
Msh3P13705 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Msh3P13705 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh3P13705 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
Msh3P13705 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh3P13705 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh3P13705 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Msh3P13705 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Msh3P13705 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Msh3P13705 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
Msh3P13705 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Msh3P13705 Gm10517-202ENSMUST00000192970 758 ntBASIC19.33■□□□□ 0.68
Msh3P13705 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.33■□□□□ 0.68
Msh3P13705 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Msh3P13705 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msh3P13705 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Msh3P13705 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msh3P13705 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Msh3P13705 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msh3P13705 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msh3P13705 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.33■□□□□ 0.68
Msh3P13705 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Msh3P13705 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.32■□□□□ 0.68
Msh3P13705 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msh3P13705 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.32■□□□□ 0.68
Msh3P13705 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 Gm13168-201ENSMUST00000121771 632 ntBASIC19.31■□□□□ 0.68
Msh3P13705 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.31■□□□□ 0.68
Msh3P13705 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msh3P13705 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.31■□□□□ 0.68
Msh3P13705 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.3■□□□□ 0.68
Msh3P13705 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Msh3P13705 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msh3P13705 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
Msh3P13705 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
Msh3P13705 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.29■□□□□ 0.68
Msh3P13705 Gm24841-201ENSMUST00000158676 357 ntBASIC19.29■□□□□ 0.68
Msh3P13705 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.29■□□□□ 0.68
Msh3P13705 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msh3P13705 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Msh3P13705 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.28■□□□□ 0.68
Msh3P13705 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msh3P13705 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Msh3P13705 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms