Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Col1a1P11087 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.62■□□□□ 0.89
Col1a1P11087 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.62■□□□□ 0.89
Col1a1P11087 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
Col1a1P11087 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col1a1P11087 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.62■□□□□ 0.89
Col1a1P11087 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.62■□□□□ 0.89
Col1a1P11087 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col1a1P11087 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.61■□□□□ 0.89
Col1a1P11087 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
Col1a1P11087 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC20.61■□□□□ 0.89
Col1a1P11087 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Col1a1P11087 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col1a1P11087 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Col1a1P11087 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Col1a1P11087 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col1a1P11087 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC20.6■□□□□ 0.89
Col1a1P11087 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col1a1P11087 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.6■□□□□ 0.89
Col1a1P11087 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col1a1P11087 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col1a1P11087 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
Col1a1P11087 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
Col1a1P11087 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC20.59■□□□□ 0.89
Col1a1P11087 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC20.59■□□□□ 0.89
Col1a1P11087 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Col1a1P11087 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Col1a1P11087 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Col1a1P11087 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col1a1P11087 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Col1a1P11087 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col1a1P11087 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.58■□□□□ 0.89
Col1a1P11087 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col1a1P11087 Gm43514-201ENSMUST00000198852 424 ntBASIC20.58■□□□□ 0.89
Col1a1P11087 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC20.58■□□□□ 0.89
Col1a1P11087 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col1a1P11087 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Col1a1P11087 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col1a1P11087 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Col1a1P11087 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Col1a1P11087 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col1a1P11087 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col1a1P11087 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.58■□□□□ 0.88
Col1a1P11087 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Col1a1P11087 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.57■□□□□ 0.88
Col1a1P11087 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Col1a1P11087 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Birc2-201ENSMUST00000054878 378 ntBASIC20.57■□□□□ 0.88
Col1a1P11087 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col1a1P11087 Olfr129-201ENSMUST00000122318 993 ntBASIC20.56■□□□□ 0.88
Col1a1P11087 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.56■□□□□ 0.88
Col1a1P11087 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.56■□□□□ 0.88
Col1a1P11087 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.56■□□□□ 0.88
Col1a1P11087 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col1a1P11087 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
Col1a1P11087 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col1a1P11087 Golph3-205ENSMUST00000228671 2842 ntBASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms