Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TnfP06804 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TnfP06804 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TnfP06804 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.69■□□□□ 0.58
TnfP06804 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TnfP06804 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.69■□□□□ 0.58
TnfP06804 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
TnfP06804 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.69■□□□□ 0.58
TnfP06804 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.69■□□□□ 0.58
TnfP06804 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TnfP06804 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TnfP06804 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TnfP06804 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.68■□□□□ 0.58
TnfP06804 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.68■□□□□ 0.58
TnfP06804 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TnfP06804 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TnfP06804 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
TnfP06804 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.68■□□□□ 0.58
TnfP06804 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.67■□□□□ 0.58
TnfP06804 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.67■□□□□ 0.58
TnfP06804 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TnfP06804 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.67■□□□□ 0.58
TnfP06804 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
TnfP06804 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.67■□□□□ 0.58
TnfP06804 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TnfP06804 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TnfP06804 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TnfP06804 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
TnfP06804 Gm7638-201ENSMUST00000121348 967 ntBASIC18.66■□□□□ 0.58
TnfP06804 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TnfP06804 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.66■□□□□ 0.58
TnfP06804 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
TnfP06804 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TnfP06804 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.66■□□□□ 0.58
TnfP06804 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.65■□□□□ 0.58
TnfP06804 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TnfP06804 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TnfP06804 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TnfP06804 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
TnfP06804 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TnfP06804 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TnfP06804 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.64■□□□□ 0.57
TnfP06804 Gm18959-201ENSMUST00000208954 655 ntBASIC18.64■□□□□ 0.57
TnfP06804 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TnfP06804 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
TnfP06804 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TnfP06804 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TnfP06804 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TnfP06804 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TnfP06804 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TnfP06804 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms