Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 AA543401-201ENSMUST00000164248 1269 ntBASIC17.7■□□□□ 0.42
Col6a3E9PWQ3 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col6a3E9PWQ3 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col6a3E9PWQ3 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Gm23547-201ENSMUST00000158210 271 ntBASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Col6a3E9PWQ3 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a3E9PWQ3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Gm4974-201ENSMUST00000209974 875 ntBASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Il3ra-202ENSMUST00000223589 738 ntBASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a3E9PWQ3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a3E9PWQ3 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Gm44872-201ENSMUST00000207864 420 ntBASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.65■□□□□ 0.42
Col6a3E9PWQ3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col6a3E9PWQ3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col6a3E9PWQ3 Gm14127-201ENSMUST00000117906 678 ntBASIC17.64■□□□□ 0.42
Col6a3E9PWQ3 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.64■□□□□ 0.42
Col6a3E9PWQ3 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a3E9PWQ3 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms