Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 AC106830.1-201ENSMUST00000228032 1003 ntBASIC4.42□□□□□ -1.7
Trim40Q3UWA4 AC157572.4-201ENSMUST00000228203 549 ntBASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Glra3-201ENSMUST00000000275 6508 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Olfr827-201ENSMUST00000058123 1058 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Vmn1r68-201ENSMUST00000058362 960 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Olfr1446-201ENSMUST00000081236 1044 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Mir218-2-201ENSMUST00000083649 110 ntBASIC4.42□□□□□ -1.7
Trim40Q3UWA4 mt-Nd4l-201ENSMUST00000084013 297 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Olfr1180-201ENSMUST00000099824 1063 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Olfr1170-201ENSMUST00000099831 951 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Vmn1r172-201ENSMUST00000038694 9009 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Hm629797-201ENSMUST00000183645 2398 ntBASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Xiap-202ENSMUST00000055483 6374 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Scel-201ENSMUST00000095576 2424 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Gm7988-201ENSMUST00000196623 2297 ntBASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Cnot4-206ENSMUST00000202143 3202 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Trim40Q3UWA4 Krcc1-201ENSMUST00000080949 1393 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Lin28b-201ENSMUST00000079390 5402 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm44283-201ENSMUST00000204461 3950 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Olfr1535-202ENSMUST00000217519 3959 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Kbtbd8-202ENSMUST00000119582 4518 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Csn3-203ENSMUST00000113271 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm37303-201ENSMUST00000194202 1559 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Xrn1-209ENSMUST00000190665 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Hormad1-203ENSMUST00000107154 1444 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Hormad1-204ENSMUST00000171191 1437 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm13757-201ENSMUST00000126038 4460 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Igkv10-94-201ENSMUST00000103330 347 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Olfr328-202ENSMUST00000108824 1199 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm15225-201ENSMUST00000120449 1017 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm11965-201ENSMUST00000122017 277 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm3160-201ENSMUST00000128343 607 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 C030037F17Rik-201ENSMUST00000155211 406 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm22725-201ENSMUST00000158092 110 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm3727-201ENSMUST00000168458 995 ntAPPRIS P5 TSL 5 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm5777-201ENSMUST00000177265 448 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm21698-201ENSMUST00000178487 666 ntTSL 5 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm26693-201ENSMUST00000181318 1021 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Mir6416-201ENSMUST00000183664 117 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm27225-201ENSMUST00000183833 557 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 1700054K19Rik-201ENSMUST00000186102 452 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 1700027H10Rik-201ENSMUST00000186818 584 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm28957-201ENSMUST00000190174 373 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Trbv28-201ENSMUST00000192804 264 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm33093-201ENSMUST00000197751 790 ntTSL 5 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm19617-201ENSMUST00000202977 308 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm19761-201ENSMUST00000205372 391 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm44649-201ENSMUST00000205608 364 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm6145-201ENSMUST00000209522 710 ntTSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm15839-202ENSMUST00000211219 664 ntTSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm46138-201ENSMUST00000215294 426 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 AC123830.1-201ENSMUST00000217156 609 ntTSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 AC164424.1-201ENSMUST00000221690 170 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 AC129308.2-201ENSMUST00000224588 789 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Ear-ps9-202ENSMUST00000226796 245 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 AC192088.2-201ENSMUST00000227590 411 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 S100g-201ENSMUST00000038769 480 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 5430402E10Rik-201ENSMUST00000063127 798 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm14393-201ENSMUST00000072895 625 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Olfr1407-ps1-201ENSMUST00000085885 797 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Olfr1200-201ENSMUST00000099811 1011 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Olfr669-202ENSMUST00000210138 2195 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Nxt2-202ENSMUST00000112913 2538 ntTSL 3 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Olfr91-202ENSMUST00000216376 3832 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm37099-201ENSMUST00000191902 3451 ntBASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm4166-201ENSMUST00000220893 2996 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim40Q3UWA4 Gm14806-201ENSMUST00000116606 2110 ntBASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Gm45160-201ENSMUST00000207112 3099 ntBASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Olfr536-205ENSMUST00000215768 4231 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Phf11c-201ENSMUST00000166912 3459 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Trim40Q3UWA4 2900092N22Rik-201ENSMUST00000193601 1409 ntBASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Gm2824-202ENSMUST00000180955 3522 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Olfr57-202ENSMUST00000203906 1647 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Ank2-208ENSMUST00000182078 14305 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.7
Trim40Q3UWA4 Mir147-201ENSMUST00000102354 79 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm5725-201ENSMUST00000105195 924 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm13023-202ENSMUST00000105770 833 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm11912-201ENSMUST00000117235 264 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm14107-201ENSMUST00000117774 330 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Mup-ps28-201ENSMUST00000120686 289 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm11805-201ENSMUST00000121238 600 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm12978-201ENSMUST00000121250 522 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm24383-201ENSMUST00000122691 333 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm23496-201ENSMUST00000157741 248 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm24216-201ENSMUST00000158259 117 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Vmn1r129-201ENSMUST00000165961 924 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Atp2b4-208ENSMUST00000167348 243 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm8720-201ENSMUST00000168392 924 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm5916-201ENSMUST00000168452 1142 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Obox4-ps23-201ENSMUST00000175738 1137 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Obox4-ps33-201ENSMUST00000176649 1139 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Obox4-ps22-201ENSMUST00000179602 1137 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Obox4-ps13-201ENSMUST00000180123 1137 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm3434-202ENSMUST00000184421 521 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm27985-201ENSMUST00000185112 378 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm37857-201ENSMUST00000191784 1199 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm34176-201ENSMUST00000192621 474 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm38080-201ENSMUST00000194035 268 ntBASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Gm38163-201ENSMUST00000194112 482 ntTSL 5 BASIC4.4□□□□□ -1.71
Trim40Q3UWA4 Fbxw27-201ENSMUST00000197125 810 ntAPPRIS P2 TSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 76,532 protein–RNA pairs in 83.9 ms