Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm37722-201ENSMUST00000193757 208 ntBASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm37025-201ENSMUST00000195159 829 ntBASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nkx2-4Q9EQM3 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nkx2-4Q9EQM3 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Gm27459-201ENSMUST00000184860 107 ntBASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nkx2-4Q9EQM3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
Nkx2-4Q9EQM3 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Nkx2-4Q9EQM3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Nkx2-4Q9EQM3 Gm10418-201ENSMUST00000100943 576 ntBASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Nkx2-4Q9EQM3 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Gm43347-201ENSMUST00000200226 580 ntBASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nkx2-4Q9EQM3 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nkx2-4Q9EQM3 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms