Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rpap3Q9D706 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpap3Q9D706 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rpap3Q9D706 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpap3Q9D706 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.45■□□□□ 0.7
Rpap3Q9D706 Idnk-204ENSMUST00000226010 1898 ntBASIC19.45■□□□□ 0.7
Rpap3Q9D706 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.45■□□□□ 0.7
Rpap3Q9D706 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Gm18959-201ENSMUST00000208954 655 ntBASIC19.45■□□□□ 0.7
Rpap3Q9D706 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rpap3Q9D706 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Gm7638-201ENSMUST00000121348 967 ntBASIC19.44■□□□□ 0.7
Rpap3Q9D706 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Rpap3Q9D706 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Gm2274-201ENSMUST00000184539 609 ntBASIC19.43■□□□□ 0.7
Rpap3Q9D706 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.43■□□□□ 0.7
Rpap3Q9D706 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rpap3Q9D706 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Gm45058-201ENSMUST00000205810 766 ntBASIC19.42■□□□□ 0.7
Rpap3Q9D706 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rpap3Q9D706 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Rpap3Q9D706 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rpap3Q9D706 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Gm37025-201ENSMUST00000195159 829 ntBASIC19.4■□□□□ 0.7
Rpap3Q9D706 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rpap3Q9D706 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms