Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Gm37292-201ENSMUST00000192062 758 ntBASIC18.06■□□□□ 0.48
Vps28Q9D1C8 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.06■□□□□ 0.48
Vps28Q9D1C8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps28Q9D1C8 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.04■□□□□ 0.48
Vps28Q9D1C8 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps28Q9D1C8 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Gm715-201ENSMUST00000117865 831 ntBASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps28Q9D1C8 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps28Q9D1C8 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps28Q9D1C8 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps28Q9D1C8 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps28Q9D1C8 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vps28Q9D1C8 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms