Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Smc1aQ9CU62 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Gm7977-201ENSMUST00000193787 748 ntBASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Smc1aQ9CU62 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.67■□□□□ 0.74
Smc1aQ9CU62 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Gm11249-201ENSMUST00000117071 859 ntBASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smc1aQ9CU62 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Gm13836-201ENSMUST00000121159 501 ntBASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.65■□□□□ 0.74
Smc1aQ9CU62 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smc1aQ9CU62 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smc1aQ9CU62 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smc1aQ9CU62 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms