Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx6-1Q99MA9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Gm7213-201ENSMUST00000215977 950 ntBASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Gm15853-202ENSMUST00000195518 2041 ntBASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Nkx6-1Q99MA9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Gm24841-201ENSMUST00000158676 357 ntBASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Gm18688-201ENSMUST00000204695 1859 ntBASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nkx6-1Q99MA9 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Gm11355-201ENSMUST00000121120 306 ntBASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Gm18958-201ENSMUST00000174258 762 ntBASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Mir3081-201ENSMUST00000175305 84 ntBASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Nkx6-1Q99MA9 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Mzt1-203ENSMUST00000227948 952 ntBASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Nkx6-1Q99MA9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Nkx6-1Q99MA9 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Nkx6-1Q99MA9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Nkx6-1Q99MA9 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Nkx6-1Q99MA9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Nkx6-1Q99MA9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Nkx6-1Q99MA9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
Nkx6-1Q99MA9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Nkx6-1Q99MA9 Gm24589-201ENSMUST00000116692 94 ntBASIC16.45■□□□□ 0.22
Nkx6-1Q99MA9 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
Nkx6-1Q99MA9 Gm11950-201ENSMUST00000121615 838 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms