Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC21.31■■□□□ 1
Brf1Q8CFK2 Gm37292-201ENSMUST00000192062 758 ntBASIC21.31■■□□□ 1
Brf1Q8CFK2 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Brf1Q8CFK2 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Brf1Q8CFK2 Gm45606-201ENSMUST00000209836 2795 ntBASIC21.31■■□□□ 1
Brf1Q8CFK2 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Brf1Q8CFK2 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Brf1Q8CFK2 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Brf1Q8CFK2 Gm8520-201ENSMUST00000186517 868 ntBASIC21.3■■□□□ 1
Brf1Q8CFK2 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Brf1Q8CFK2 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC21.3■■□□□ 1
Brf1Q8CFK2 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Brf1Q8CFK2 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.3■■□□□ 1
Brf1Q8CFK2 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Gm37811-201ENSMUST00000192416 2601 ntBASIC21.29■■□□□ 1
Brf1Q8CFK2 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Gm6576-201ENSMUST00000169678 883 ntBASIC21.29■■□□□ 1
Brf1Q8CFK2 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.29■■□□□ 1
Brf1Q8CFK2 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Brf1Q8CFK2 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC21.29■■□□□ 1
Brf1Q8CFK2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC21.28■■□□□ 1
Brf1Q8CFK2 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC21.28■■□□□ 1
Brf1Q8CFK2 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC21.28■■□□□ 1
Brf1Q8CFK2 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC21.28■■□□□ 1
Brf1Q8CFK2 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Brf1Q8CFK2 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Brf1Q8CFK2 Gm15378-201ENSMUST00000121894 207 ntBASIC21.28■■□□□ 1
Brf1Q8CFK2 Gm43183-201ENSMUST00000200632 547 ntBASIC21.28■■□□□ 1
Brf1Q8CFK2 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC21.28■■□□□ 1
Brf1Q8CFK2 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Brf1Q8CFK2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Brf1Q8CFK2 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Brf1Q8CFK2 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC21.28■■□□□ 1
Brf1Q8CFK2 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC21.28■■□□□ 1
Brf1Q8CFK2 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Brf1Q8CFK2 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC21.27■■□□□ 1
Brf1Q8CFK2 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Brf1Q8CFK2 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Brf1Q8CFK2 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Brf1Q8CFK2 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Brf1Q8CFK2 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Gm12382-201ENSMUST00000122005 922 ntBASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Brf1Q8CFK2 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Brf1Q8CFK2 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms