Protein–RNA interactions for Protein: Q8C8B0

Alx1, ALX homeobox protein 1, mousemouse

Predictions only

Length 326 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Alx1Q8C8B0 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Gm37055-201ENSMUST00000191866 133 ntBASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Gm38027-201ENSMUST00000192315 235 ntBASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.65■□□□□ 0.9
Alx1Q8C8B0 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.64■□□□□ 0.89
Alx1Q8C8B0 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Alx1Q8C8B0 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Alx1Q8C8B0 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Alx1Q8C8B0 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Gm12085-201ENSMUST00000119263 940 ntBASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Alx1Q8C8B0 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Alx1Q8C8B0 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.61■□□□□ 0.89
Alx1Q8C8B0 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Alx1Q8C8B0 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.59■□□□□ 0.89
Alx1Q8C8B0 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Alx1Q8C8B0 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Alx1Q8C8B0 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms