Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Gm6728-201ENSMUST00000178117 1065 ntBASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Gm21362-201ENSMUST00000194272 928 ntBASIC24.28■■□□□ 1.48
Usp40Q8BWR4 AC134329.2-201ENSMUST00000217897 428 ntBASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Gm7370-201ENSMUST00000219471 767 ntBASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Usp40Q8BWR4 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Gm16061-201ENSMUST00000122167 857 ntBASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Gm22697-201ENSMUST00000175194 63 ntBASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Usp40Q8BWR4 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Gm6345-202ENSMUST00000180900 204 ntBASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Usp40Q8BWR4 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Usp40Q8BWR4 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 AA414768-201ENSMUST00000121924 1257 ntBASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Gm18101-201ENSMUST00000215769 548 ntBASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
Usp40Q8BWR4 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Gm9731-201ENSMUST00000209480 747 ntBASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Gm10819-201ENSMUST00000099988 561 ntBASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Usp40Q8BWR4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Gm45141-201ENSMUST00000206502 1888 ntBASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Gm37025-201ENSMUST00000195159 829 ntBASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Gm10459-201ENSMUST00000202708 1155 ntBASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Il3ra-202ENSMUST00000223589 738 ntBASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC24.22■■□□□ 1.47
Usp40Q8BWR4 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Usp40Q8BWR4 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 68.9 ms