Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lig4Q8BTF7 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Timm23-208ENSMUST00000226683 750 ntBASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lig4Q8BTF7 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lig4Q8BTF7 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Gm4974-201ENSMUST00000209974 875 ntBASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Gm5417-201ENSMUST00000079706 384 ntBASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Lig4Q8BTF7 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig4Q8BTF7 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig4Q8BTF7 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig4Q8BTF7 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig4Q8BTF7 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Lig4Q8BTF7 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lig4Q8BTF7 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.64■□□□□ 0.57
Lig4Q8BTF7 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lig4Q8BTF7 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lig4Q8BTF7 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms