Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chmp2bQ8BJF9 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chmp2bQ8BJF9 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Gm37563-201ENSMUST00000192580 1513 ntBASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Gm5874-201ENSMUST00000096101 508 ntBASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.04■□□□□ 0.48
Chmp2bQ8BJF9 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 AV356131-201ENSMUST00000206201 750 ntBASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chmp2bQ8BJF9 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp2bQ8BJF9 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
Chmp2bQ8BJF9 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp2bQ8BJF9 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp2bQ8BJF9 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp2bQ8BJF9 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp2bQ8BJF9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Chmp2bQ8BJF9 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms