Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx55Q6ZPL9 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Mir3081-201ENSMUST00000175305 84 ntBASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Otx2os1-206ENSMUST00000228153 787 ntBASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx55Q6ZPL9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx55Q6ZPL9 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx55Q6ZPL9 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx55Q6ZPL9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Gm27742-201ENSMUST00000184667 60 ntBASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Ddx55Q6ZPL9 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx55Q6ZPL9 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Actl10-202ENSMUST00000226583 1501 ntBASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx55Q6ZPL9 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms