Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rtl3Q6P1Y1 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Gm15565-201ENSMUST00000118890 427 ntBASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rtl3Q6P1Y1 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Gm37055-201ENSMUST00000191866 133 ntBASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rtl3Q6P1Y1 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rtl3Q6P1Y1 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
Rtl3Q6P1Y1 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Rtl3Q6P1Y1 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Gm29791-202ENSMUST00000207888 369 ntBASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rtl3Q6P1Y1 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Gm10418-201ENSMUST00000100943 576 ntBASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.19■□□□□ 0.5
Rtl3Q6P1Y1 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms