Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim40Q3UWA4 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim40Q3UWA4 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Gm40848-201ENSMUST00000221998 324 ntBASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC16.58■□□□□ 0.24
Trim40Q3UWA4 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Idnk-204ENSMUST00000226010 1898 ntBASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim40Q3UWA4 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Gm38205-201ENSMUST00000192243 258 ntBASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
Trim40Q3UWA4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim40Q3UWA4 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Gm45417-201ENSMUST00000209533 758 ntBASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim40Q3UWA4 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms