Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Nespas-201ENSMUST00000143738 1083 ntBASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col28a1Q2UY11 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
Col28a1Q2UY11 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
Col28a1Q2UY11 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col28a1Q2UY11 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Gm10653-202ENSMUST00000139570 835 ntBASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col28a1Q2UY11 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Gm38345-201ENSMUST00000192635 1748 ntBASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col28a1Q2UY11 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Mir5133-201ENSMUST00000174955 77 ntBASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col28a1Q2UY11 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms