Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col8a1Q00780 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Col8a1Q00780 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Col8a1Q00780 Hsf1-204ENSMUST00000226872 2104 ntBASIC15.02■□□□□ -0
Col8a1Q00780 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Col8a1Q00780 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.02■□□□□ -0
Col8a1Q00780 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Col8a1Q00780 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC15.02■□□□□ -0
Col8a1Q00780 Gm5587-201ENSMUST00000206270 674 ntBASIC15.02■□□□□ -0
Col8a1Q00780 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC15.02■□□□□ -0
Col8a1Q00780 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col8a1Q00780 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col8a1Q00780 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col8a1Q00780 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Col8a1Q00780 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col8a1Q00780 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Col8a1Q00780 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col8a1Q00780 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col8a1Q00780 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col8a1Q00780 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col8a1Q00780 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.01□□□□□ -0.01
Col8a1Q00780 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Gm21559-201ENSMUST00000220638 855 ntBASIC15.01□□□□□ -0.01
Col8a1Q00780 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Gm8587-201ENSMUST00000076538 843 ntBASIC15.01□□□□□ -0.01
Col8a1Q00780 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col8a1Q00780 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col8a1Q00780 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col8a1Q00780 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col8a1Q00780 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15□□□□□ -0.01
Col8a1Q00780 Gm43514-201ENSMUST00000198852 424 ntBASIC15□□□□□ -0.01
Col8a1Q00780 Gm17808-201ENSMUST00000200859 894 ntBASIC15□□□□□ -0.01
Col8a1Q00780 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col8a1Q00780 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC14.99□□□□□ -0.01
Col8a1Q00780 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
Col8a1Q00780 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC14.99□□□□□ -0.01
Col8a1Q00780 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Col8a1Q00780 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC14.99□□□□□ -0.01
Col8a1Q00780 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col8a1Q00780 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Gm24589-201ENSMUST00000116692 94 ntBASIC14.98□□□□□ -0.01
Col8a1Q00780 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
Col8a1Q00780 Gm6443-201ENSMUST00000203599 874 ntBASIC14.98□□□□□ -0.01
Col8a1Q00780 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col8a1Q00780 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col8a1Q00780 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col8a1Q00780 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col8a1Q00780 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col8a1Q00780 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col8a1Q00780 Gm16061-201ENSMUST00000122167 857 ntBASIC14.97□□□□□ -0.01
Col8a1Q00780 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC14.97□□□□□ -0.01
Col8a1Q00780 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC14.97□□□□□ -0.01
Col8a1Q00780 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC14.97□□□□□ -0.01
Col8a1Q00780 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col8a1Q00780 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms