Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm45058-201ENSMUST00000205810 766 ntBASIC15.26■□□□□ 0.03
Nkx3-1P97436 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Gm7367-201ENSMUST00000057611 492 ntBASIC15.26■□□□□ 0.03
Nkx3-1P97436 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Golph3-205ENSMUST00000228671 2842 ntBASIC15.25■□□□□ 0.03
Nkx3-1P97436 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Gm2274-201ENSMUST00000184539 609 ntBASIC15.25■□□□□ 0.03
Nkx3-1P97436 Gm4974-201ENSMUST00000209974 875 ntBASIC15.25■□□□□ 0.03
Nkx3-1P97436 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Nkx3-1P97436 Gm38308-201ENSMUST00000194934 1809 ntBASIC15.24■□□□□ 0.03
Nkx3-1P97436 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Mir5130-201ENSMUST00000175160 84 ntBASIC15.24■□□□□ 0.03
Nkx3-1P97436 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Gm10819-201ENSMUST00000099988 561 ntBASIC15.24■□□□□ 0.03
Nkx3-1P97436 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.24■□□□□ 0.03
Nkx3-1P97436 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nkx3-1P97436 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Gm10013-201ENSMUST00000106074 672 ntBASIC15.23■□□□□ 0.03
Nkx3-1P97436 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Gm23634-201ENSMUST00000175071 91 ntBASIC15.23■□□□□ 0.03
Nkx3-1P97436 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-1P97436 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gm18032-201ENSMUST00000222541 538 ntBASIC15.22■□□□□ 0.03
Nkx3-1P97436 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Gm9885-202ENSMUST00000186234 2209 ntBASIC15.22■□□□□ 0.03
Nkx3-1P97436 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-1P97436 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms