Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ercc3P49135 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ercc3P49135 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
Ercc3P49135 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ercc3P49135 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Mir1199-201ENSMUST00000117015 119 ntBASIC20.89■□□□□ 0.93
Ercc3P49135 Gm13401-201ENSMUST00000117074 291 ntBASIC20.89■□□□□ 0.93
Ercc3P49135 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.89■□□□□ 0.93
Ercc3P49135 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Gm10252-201ENSMUST00000209541 832 ntBASIC20.89■□□□□ 0.93
Ercc3P49135 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Ercc3P49135 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ercc3P49135 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.88■□□□□ 0.93
Ercc3P49135 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.88■□□□□ 0.93
Ercc3P49135 Mir6349-201ENSMUST00000184059 97 ntBASIC20.88■□□□□ 0.93
Ercc3P49135 AC166341.7-201ENSMUST00000221698 126 ntBASIC20.88■□□□□ 0.93
Ercc3P49135 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ercc3P49135 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC20.88■□□□□ 0.93
Ercc3P49135 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
Ercc3P49135 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC20.88■□□□□ 0.93
Ercc3P49135 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Ercc3P49135 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ercc3P49135 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC20.86■□□□□ 0.93
Ercc3P49135 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Ercc3P49135 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ercc3P49135 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ercc3P49135 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ercc3P49135 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.85■□□□□ 0.93
Ercc3P49135 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Ercc3P49135 Gm12382-201ENSMUST00000122005 922 ntBASIC20.85■□□□□ 0.93
Ercc3P49135 AC154649.1-201ENSMUST00000227392 384 ntBASIC20.85■□□□□ 0.93
Ercc3P49135 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ercc3P49135 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Ercc3P49135 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.84■□□□□ 0.93
Ercc3P49135 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.84■□□□□ 0.93
Ercc3P49135 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ercc3P49135 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ercc3P49135 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ercc3P49135 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Ercc3P49135 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ercc3P49135 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.83■□□□□ 0.93
Ercc3P49135 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Ercc3P49135 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.83■□□□□ 0.93
Ercc3P49135 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ercc3P49135 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ercc3P49135 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ercc3P49135 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.83■□□□□ 0.92
Ercc3P49135 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Ercc3P49135 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.83■□□□□ 0.92
Ercc3P49135 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms