Protein–RNA interactions for Protein: P33435

Mmp13, Collagenase 3, mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp13P33435 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.07■□□□□ 0.48
Mmp13P33435 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.07■□□□□ 0.48
Mmp13P33435 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Mmp13P33435 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Mmp13P33435 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Mmp13P33435 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Mmp13P33435 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Idnk-204ENSMUST00000226010 1898 ntBASIC18.06■□□□□ 0.48
Mmp13P33435 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Mmp13P33435 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.06■□□□□ 0.48
Mmp13P33435 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Mmp13P33435 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.06■□□□□ 0.48
Mmp13P33435 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.06■□□□□ 0.48
Mmp13P33435 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Mmp13P33435 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.05■□□□□ 0.48
Mmp13P33435 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.05■□□□□ 0.48
Mmp13P33435 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.05■□□□□ 0.48
Mmp13P33435 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.05■□□□□ 0.48
Mmp13P33435 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Mmp13P33435 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Mmp13P33435 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.04■□□□□ 0.48
Mmp13P33435 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Mmp13P33435 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Mmp13P33435 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.04■□□□□ 0.48
Mmp13P33435 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Mmp13P33435 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.03■□□□□ 0.48
Mmp13P33435 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.03■□□□□ 0.48
Mmp13P33435 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Mmp13P33435 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.03■□□□□ 0.48
Mmp13P33435 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Mmp13P33435 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Mmp13P33435 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Mmp13P33435 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Mmp13P33435 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Mmp13P33435 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.02■□□□□ 0.48
Mmp13P33435 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Mmp13P33435 Rab3c-203ENSMUST00000224180 967 ntBASIC18.02■□□□□ 0.48
Mmp13P33435 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.02■□□□□ 0.48
Mmp13P33435 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Mmp13P33435 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Mmp13P33435 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.47
Mmp13P33435 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Mmp13P33435 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Mmp13P33435 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Mmp13P33435 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Mmp13P33435 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.01■□□□□ 0.47
Mmp13P33435 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Mmp13P33435 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Mmp13P33435 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Mmp13P33435 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms