Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm21814-202ENSMUST00000203277 873 ntBASIC16.73■□□□□ 0.27
Msx1P13297 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Msx1P13297 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC16.73■□□□□ 0.27
Msx1P13297 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Tgds-204ENSMUST00000228543 1594 ntBASIC16.72■□□□□ 0.27
Msx1P13297 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Msx1P13297 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC16.72■□□□□ 0.27
Msx1P13297 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC16.72■□□□□ 0.27
Msx1P13297 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msx1P13297 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.72■□□□□ 0.27
Msx1P13297 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.71■□□□□ 0.27
Msx1P13297 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Msx1P13297 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC16.71■□□□□ 0.27
Msx1P13297 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Msx1P13297 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC16.71■□□□□ 0.27
Msx1P13297 Grk6-206ENSMUST00000224995 2971 ntBASIC16.71■□□□□ 0.27
Msx1P13297 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msx1P13297 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Msx1P13297 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Msx1P13297 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Msx1P13297 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msx1P13297 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msx1P13297 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Msx1P13297 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Msx1P13297 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msx1P13297 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.7■□□□□ 0.26
Msx1P13297 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.7■□□□□ 0.26
Msx1P13297 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msx1P13297 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.7■□□□□ 0.26
Msx1P13297 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.7■□□□□ 0.26
Msx1P13297 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msx1P13297 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Msx1P13297 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Fst-202ENSMUST00000223640 2612 ntBASIC16.69■□□□□ 0.26
Msx1P13297 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msx1P13297 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
Msx1P13297 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Msx1P13297 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msx1P13297 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msx1P13297 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msx1P13297 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC16.68■□□□□ 0.26
Msx1P13297 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Msx1P13297 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Msx1P13297 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Msx1P13297 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Gm43183-201ENSMUST00000200632 547 ntBASIC16.67■□□□□ 0.26
Msx1P13297 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.67■□□□□ 0.26
Msx1P13297 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.67■□□□□ 0.26
Msx1P13297 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.67■□□□□ 0.26
Msx1P13297 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Msx1P13297 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Msx1P13297 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC16.67■□□□□ 0.26
Msx1P13297 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms