Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.28■□□□□ 0.36
Cbx4O55187 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.28■□□□□ 0.36
Cbx4O55187 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cbx4O55187 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cbx4O55187 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.27■□□□□ 0.36
Cbx4O55187 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.27■□□□□ 0.36
Cbx4O55187 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 Gm11249-201ENSMUST00000117071 859 ntBASIC17.27■□□□□ 0.36
Cbx4O55187 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 Mir2861-201ENSMUST00000175539 82 ntBASIC17.27■□□□□ 0.36
Cbx4O55187 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC17.27■□□□□ 0.36
Cbx4O55187 Gm8969-201ENSMUST00000199694 526 ntBASIC17.27■□□□□ 0.36
Cbx4O55187 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.27■□□□□ 0.36
Cbx4O55187 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cbx4O55187 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.27■□□□□ 0.35
Cbx4O55187 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.27■□□□□ 0.35
Cbx4O55187 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cbx4O55187 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cbx4O55187 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.26■□□□□ 0.35
Cbx4O55187 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Gm10418-201ENSMUST00000100943 576 ntBASIC17.26■□□□□ 0.35
Cbx4O55187 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cbx4O55187 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.26■□□□□ 0.35
Cbx4O55187 Gm10138-203ENSMUST00000206952 366 ntBASIC17.26■□□□□ 0.35
Cbx4O55187 Gm29791-202ENSMUST00000207888 369 ntBASIC17.26■□□□□ 0.35
Cbx4O55187 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.26■□□□□ 0.35
Cbx4O55187 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.26■□□□□ 0.35
Cbx4O55187 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cbx4O55187 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.26■□□□□ 0.35
Cbx4O55187 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Gm20049-201ENSMUST00000219950 730 ntBASIC17.25■□□□□ 0.35
Cbx4O55187 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.25■□□□□ 0.35
Cbx4O55187 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cbx4O55187 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cbx4O55187 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.24■□□□□ 0.35
Cbx4O55187 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC17.24■□□□□ 0.35
Cbx4O55187 Gm10653-202ENSMUST00000139570 835 ntBASIC17.24■□□□□ 0.35
Cbx4O55187 Mir6349-201ENSMUST00000184059 97 ntBASIC17.24■□□□□ 0.35
Cbx4O55187 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.24■□□□□ 0.35
Cbx4O55187 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cbx4O55187 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cbx4O55187 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cbx4O55187 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cbx4O55187 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Cbx4O55187 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.23■□□□□ 0.35
Cbx4O55187 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cbx4O55187 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.23■□□□□ 0.35
Cbx4O55187 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.23■□□□□ 0.35
Cbx4O55187 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.23■□□□□ 0.35
Cbx4O55187 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cbx4O55187 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms