Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarce1O54941 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarce1O54941 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Smarce1O54941 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarce1O54941 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarce1O54941 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.98■□□□□ 0.95
Smarce1O54941 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Smarce1O54941 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.98■□□□□ 0.95
Smarce1O54941 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarce1O54941 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Smarce1O54941 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.97■□□□□ 0.95
Smarce1O54941 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.97■□□□□ 0.95
Smarce1O54941 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Gm10418-201ENSMUST00000100943 576 ntBASIC20.97■□□□□ 0.95
Smarce1O54941 Gm2399-201ENSMUST00000104944 225 ntBASIC20.97■□□□□ 0.95
Smarce1O54941 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.97■□□□□ 0.95
Smarce1O54941 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.97■□□□□ 0.95
Smarce1O54941 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.97■□□□□ 0.95
Smarce1O54941 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Smarce1O54941 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Smarce1O54941 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarce1O54941 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.96■□□□□ 0.95
Smarce1O54941 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarce1O54941 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Smarce1O54941 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.95■□□□□ 0.94
Smarce1O54941 Gm6211-202ENSMUST00000167849 925 ntBASIC20.95■□□□□ 0.94
Smarce1O54941 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Gm7291-201ENSMUST00000199147 382 ntBASIC20.95■□□□□ 0.94
Smarce1O54941 Gm29791-202ENSMUST00000207888 369 ntBASIC20.95■□□□□ 0.94
Smarce1O54941 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Smarce1O54941 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Smarce1O54941 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.95■□□□□ 0.94
Smarce1O54941 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Smarce1O54941 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.95■□□□□ 0.94
Smarce1O54941 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarce1O54941 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Smarce1O54941 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Smarce1O54941 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.94■□□□□ 0.94
Smarce1O54941 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.94■□□□□ 0.94
Smarce1O54941 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Smarce1O54941 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smarce1O54941 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smarce1O54941 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smarce1O54941 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smarce1O54941 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smarce1O54941 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms