Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Clrn1Q8K445 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clrn1Q8K445 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clrn1Q8K445 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Gm11249-201ENSMUST00000117071 859 ntBASIC16.72■□□□□ 0.27
Clrn1Q8K445 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Clrn1Q8K445 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Rarb-207ENSMUST00000225921 2756 ntBASIC16.71■□□□□ 0.27
Clrn1Q8K445 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC16.71■□□□□ 0.27
Clrn1Q8K445 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Clrn1Q8K445 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Gm12527-201ENSMUST00000117967 564 ntBASIC16.7■□□□□ 0.26
Clrn1Q8K445 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.7■□□□□ 0.26
Clrn1Q8K445 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.69■□□□□ 0.26
Clrn1Q8K445 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.69■□□□□ 0.26
Clrn1Q8K445 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC16.69■□□□□ 0.26
Clrn1Q8K445 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Clrn1Q8K445 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Trmt13-210ENSMUST00000198454 880 ntBASIC16.68■□□□□ 0.26
Clrn1Q8K445 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Clrn1Q8K445 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.67■□□□□ 0.26
Clrn1Q8K445 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Clrn1Q8K445 Gm37856-201ENSMUST00000191634 999 ntBASIC16.67■□□□□ 0.26
Clrn1Q8K445 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.67■□□□□ 0.26
Clrn1Q8K445 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.67■□□□□ 0.26
Clrn1Q8K445 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms