Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Usp40Q8BWR4 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Gm23634-201ENSMUST00000175071 91 ntBASIC24.35■■□□□ 1.49
Usp40Q8BWR4 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Usp40Q8BWR4 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Usp40Q8BWR4 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Gm10013-201ENSMUST00000106074 672 ntBASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
Usp40Q8BWR4 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
Usp40Q8BWR4 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
Usp40Q8BWR4 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
Usp40Q8BWR4 Iqck-206ENSMUST00000208658 2891 ntBASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Usp40Q8BWR4 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Usp40Q8BWR4 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 Dmtn-210ENSMUST00000228824 2377 ntBASIC24.3■■□□□ 1.48
Usp40Q8BWR4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Usp40Q8BWR4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Idnk-204ENSMUST00000226010 1898 ntBASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Usp40Q8BWR4 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 130.9 ms