Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig4Q8BTF7 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig4Q8BTF7 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig4Q8BTF7 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Lig4Q8BTF7 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig4Q8BTF7 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Mir5122-201ENSMUST00000175004 89 ntBASIC18.72■□□□□ 0.59
Lig4Q8BTF7 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lig4Q8BTF7 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Gm37055-201ENSMUST00000191866 133 ntBASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lig4Q8BTF7 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lig4Q8BTF7 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Gm13401-201ENSMUST00000117074 291 ntBASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Gm10517-202ENSMUST00000192970 758 ntBASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lig4Q8BTF7 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms