Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Gm13401-201ENSMUST00000117074 291 ntBASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.23■□□□□ 0.35
Ubfd1Q78JW9 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Gm38027-201ENSMUST00000192315 235 ntBASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
Ubfd1Q78JW9 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gm11539-201ENSMUST00000119837 557 ntBASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gm13436-201ENSMUST00000120418 567 ntBASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gm13559-201ENSMUST00000120476 863 ntBASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gm27463-201ENSMUST00000183569 57 ntBASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubfd1Q78JW9 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Ubfd1Q78JW9 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Ubfd1Q78JW9 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gm7977-201ENSMUST00000193787 748 ntBASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubfd1Q78JW9 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ubfd1Q78JW9 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubfd1Q78JW9 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubfd1Q78JW9 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubfd1Q78JW9 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms