Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx55Q6ZPL9 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx55Q6ZPL9 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx55Q6ZPL9 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx55Q6ZPL9 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Umpk-ps-201ENSMUST00000211897 827 ntBASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx55Q6ZPL9 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx55Q6ZPL9 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx55Q6ZPL9 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx55Q6ZPL9 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.19■□□□□ 0.82
Ddx55Q6ZPL9 Gm7153-201ENSMUST00000117092 455 ntBASIC20.19■□□□□ 0.82
Ddx55Q6ZPL9 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx55Q6ZPL9 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Gm11950-201ENSMUST00000121615 838 ntBASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx55Q6ZPL9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx55Q6ZPL9 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Gm18958-201ENSMUST00000174258 762 ntBASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Gm10566-201ENSMUST00000086739 996 ntBASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx55Q6ZPL9 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Gm26039-201ENSMUST00000158152 144 ntBASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Gm27357-201ENSMUST00000183754 135 ntBASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.15■□□□□ 0.82
Ddx55Q6ZPL9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ddx55Q6ZPL9 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 AC133598.3-202ENSMUST00000224219 531 ntBASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx55Q6ZPL9 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms