Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
Chd4Q6PDQ2 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chd4Q6PDQ2 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Chd4Q6PDQ2 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chd4Q6PDQ2 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Chd4Q6PDQ2 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Chd4Q6PDQ2 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Dmtn-210ENSMUST00000228824 2377 ntBASIC23.24■■□□□ 1.31
Chd4Q6PDQ2 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
Chd4Q6PDQ2 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chd4Q6PDQ2 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Gm9103-201ENSMUST00000119371 405 ntBASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd4Q6PDQ2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Chd4Q6PDQ2 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 AC130713.1-201ENSMUST00000228853 1096 ntBASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd4Q6PDQ2 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chd4Q6PDQ2 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 AC120002.2-201ENSMUST00000220205 773 ntBASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd4Q6PDQ2 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC23.17■■□□□ 1.3
Chd4Q6PDQ2 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms