Protein–RNA interactions for Protein: Q62018

Ctr9, RNA polymerase-associated protein CTR9 homolog, mousemouse

Known RBP Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctr9Q62018 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ctr9Q62018 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
Ctr9Q62018 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Mir7071-201ENSMUST00000184847 69 ntBASIC20.84■□□□□ 0.93
Ctr9Q62018 Gm5417-201ENSMUST00000079706 384 ntBASIC20.84■□□□□ 0.93
Ctr9Q62018 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ctr9Q62018 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ctr9Q62018 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ctr9Q62018 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ctr9Q62018 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.83■□□□□ 0.93
Ctr9Q62018 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ctr9Q62018 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ctr9Q62018 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.83■□□□□ 0.93
Ctr9Q62018 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.83■□□□□ 0.93
Ctr9Q62018 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.83■□□□□ 0.93
Ctr9Q62018 Gm10517-202ENSMUST00000192970 758 ntBASIC20.83■□□□□ 0.93
Ctr9Q62018 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ctr9Q62018 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.83■□□□□ 0.93
Ctr9Q62018 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Ctr9Q62018 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Ctr9Q62018 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Gm13401-201ENSMUST00000117074 291 ntBASIC20.82■□□□□ 0.92
Ctr9Q62018 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.82■□□□□ 0.92
Ctr9Q62018 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.82■□□□□ 0.92
Ctr9Q62018 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Ctr9Q62018 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ctr9Q62018 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Ctr9Q62018 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Ctr9Q62018 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ctr9Q62018 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Ctr9Q62018 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Ctr9Q62018 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.8■□□□□ 0.92
Ctr9Q62018 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.8■□□□□ 0.92
Ctr9Q62018 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.8■□□□□ 0.92
Ctr9Q62018 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.8■□□□□ 0.92
Ctr9Q62018 Timm23-208ENSMUST00000226683 750 ntBASIC20.8■□□□□ 0.92
Ctr9Q62018 Odf3b-204ENSMUST00000227834 930 ntBASIC20.8■□□□□ 0.92
Ctr9Q62018 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Ctr9Q62018 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Ctr9Q62018 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ctr9Q62018 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Ctr9Q62018 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC20.79■□□□□ 0.92
Ctr9Q62018 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC20.79■□□□□ 0.92
Ctr9Q62018 Gm3375-201ENSMUST00000203929 796 ntBASIC20.79■□□□□ 0.92
Ctr9Q62018 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ctr9Q62018 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.78■□□□□ 0.92
Ctr9Q62018 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
Ctr9Q62018 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ctr9Q62018 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Ctr9Q62018 Gm29791-202ENSMUST00000207888 369 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms