Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Gm38308-201ENSMUST00000194934 1809 ntBASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Ddb1Q3U1J4 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ddb1Q3U1J4 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Olfr129-201ENSMUST00000122318 993 ntBASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Gm29791-202ENSMUST00000207888 369 ntBASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ddb1Q3U1J4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 AW822252-206ENSMUST00000208904 237 ntBASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Ddb1Q3U1J4 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC22.52■■□□□ 1.19
Ddb1Q3U1J4 Actl10-202ENSMUST00000226583 1501 ntBASIC22.52■■□□□ 1.19
Ddb1Q3U1J4 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Gm5864-201ENSMUST00000202263 970 ntBASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ddb1Q3U1J4 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ddb1Q3U1J4 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Ddb1Q3U1J4 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ddb1Q3U1J4 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ddb1Q3U1J4 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC22.48■■□□□ 1.19
Ddb1Q3U1J4 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ddb1Q3U1J4 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
Ddb1Q3U1J4 Mir8098-201ENSMUST00000184011 137 ntBASIC22.48■■□□□ 1.19
Ddb1Q3U1J4 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms