Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.31■□□□□ 0.04
Nkx3-1P97436 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Gm43231-201ENSMUST00000202960 2258 ntBASIC15.31■□□□□ 0.04
Nkx3-1P97436 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Nkx3-1P97436 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nkx3-1P97436 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Gm21362-201ENSMUST00000194272 928 ntBASIC15.3■□□□□ 0.04
Nkx3-1P97436 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nkx3-1P97436 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Gm45906-201ENSMUST00000208911 1430 ntBASIC15.29■□□□□ 0.04
Nkx3-1P97436 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Gm38027-201ENSMUST00000192315 235 ntBASIC15.29■□□□□ 0.04
Nkx3-1P97436 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nkx3-1P97436 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 AC121961.1-201ENSMUST00000218594 1779 ntBASIC15.28■□□□□ 0.04
Nkx3-1P97436 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Nkx3-1P97436 Gm7856-201ENSMUST00000117514 1493 ntBASIC15.27■□□□□ 0.04
Nkx3-1P97436 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.27■□□□□ 0.04
Nkx3-1P97436 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.27■□□□□ 0.04
Nkx3-1P97436 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nkx3-1P97436 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.27■□□□□ 0.04
Nkx3-1P97436 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
Nkx3-1P97436 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Nkx3-1P97436 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Nkx3-1P97436 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Nkx3-1P97436 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Nkx3-1P97436 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Nkx3-1P97436 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 BC021767-201ENSMUST00000126387 1716 ntBASIC15.26■□□□□ 0.03
Nkx3-1P97436 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nkx3-1P97436 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Nkx3-1P97436 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms