Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Lig3P97386 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lig3P97386 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Lig3P97386 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.24■□□□□ 0.67
Lig3P97386 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Lig3P97386 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.24■□□□□ 0.67
Lig3P97386 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Lig3P97386 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lig3P97386 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.23■□□□□ 0.67
Lig3P97386 Gm7367-201ENSMUST00000057611 492 ntBASIC19.23■□□□□ 0.67
Lig3P97386 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Lig3P97386 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Lig3P97386 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lig3P97386 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.22■□□□□ 0.67
Lig3P97386 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
Lig3P97386 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.22■□□□□ 0.67
Lig3P97386 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Lig3P97386 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lig3P97386 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Lig3P97386 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Lig3P97386 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.21■□□□□ 0.67
Lig3P97386 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.21■□□□□ 0.67
Lig3P97386 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.21■□□□□ 0.67
Lig3P97386 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.21■□□□□ 0.67
Lig3P97386 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Lig3P97386 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Lig3P97386 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.21■□□□□ 0.67
Lig3P97386 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Lig3P97386 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Lig3P97386 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Lig3P97386 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Lig3P97386 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Lig3P97386 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.2■□□□□ 0.66
Lig3P97386 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig3P97386 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.19■□□□□ 0.66
Lig3P97386 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.19■□□□□ 0.66
Lig3P97386 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Lig3P97386 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Lig3P97386 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.19■□□□□ 0.66
Lig3P97386 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig3P97386 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Lig3P97386 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig3P97386 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms