Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HttP42859 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HttP42859 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.01■□□□□ 0.63
HttP42859 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.01■□□□□ 0.63
HttP42859 CT943659.1-201ENSMUST00000215459 326 ntBASIC19.01■□□□□ 0.63
HttP42859 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.01■□□□□ 0.63
HttP42859 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.01■□□□□ 0.63
HttP42859 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HttP42859 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.01■□□□□ 0.63
HttP42859 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.01■□□□□ 0.63
HttP42859 AC131586.3-201ENSMUST00000228355 1367 ntBASIC19.01■□□□□ 0.63
HttP42859 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HttP42859 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19■□□□□ 0.63
HttP42859 Gm12350-201ENSMUST00000121208 462 ntBASIC19■□□□□ 0.63
HttP42859 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC19■□□□□ 0.63
HttP42859 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HttP42859 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19■□□□□ 0.63
HttP42859 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19■□□□□ 0.63
HttP42859 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 AC120002.2-201ENSMUST00000220205 773 ntBASIC19■□□□□ 0.63
HttP42859 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
HttP42859 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
HttP42859 Gm9731-201ENSMUST00000209480 747 ntBASIC19■□□□□ 0.63
HttP42859 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HttP42859 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
HttP42859 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC18.99■□□□□ 0.63
HttP42859 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Gm10052-201ENSMUST00000168019 960 ntBASIC18.99■□□□□ 0.63
HttP42859 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18.99■□□□□ 0.63
HttP42859 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
HttP42859 Gm7729-201ENSMUST00000050143 801 ntBASIC18.99■□□□□ 0.63
HttP42859 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HttP42859 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.98■□□□□ 0.63
HttP42859 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.98■□□□□ 0.63
HttP42859 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.98■□□□□ 0.63
HttP42859 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Gm12895-201ENSMUST00000122214 226 ntBASIC18.98■□□□□ 0.63
HttP42859 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
HttP42859 Gm10060-201ENSMUST00000212002 111 ntBASIC18.98■□□□□ 0.63
HttP42859 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HttP42859 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HttP42859 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.97■□□□□ 0.63
HttP42859 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.97■□□□□ 0.63
HttP42859 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HttP42859 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HttP42859 Gm1401-201ENSMUST00000122048 772 ntBASIC18.97■□□□□ 0.63
HttP42859 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
HttP42859 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HttP42859 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.96■□□□□ 0.63
HttP42859 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HttP42859 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms