Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.5■□□□□ 0.71
Msh3P13705 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Msh3P13705 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.5■□□□□ 0.71
Msh3P13705 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.5■□□□□ 0.71
Msh3P13705 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Msh3P13705 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.49■□□□□ 0.71
Msh3P13705 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Msh3P13705 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Msh3P13705 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
Msh3P13705 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.48■□□□□ 0.71
Msh3P13705 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.48■□□□□ 0.71
Msh3P13705 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Msh3P13705 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msh3P13705 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Msh3P13705 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Msh3P13705 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Msh3P13705 Gm10698-201ENSMUST00000182663 604 ntBASIC19.47■□□□□ 0.71
Msh3P13705 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.47■□□□□ 0.71
Msh3P13705 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.47■□□□□ 0.71
Msh3P13705 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.47■□□□□ 0.71
Msh3P13705 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Msh3P13705 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Msh3P13705 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.47■□□□□ 0.71
Msh3P13705 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msh3P13705 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.46■□□□□ 0.71
Msh3P13705 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msh3P13705 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Msh3P13705 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.46■□□□□ 0.71
Msh3P13705 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Msh3P13705 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.45■□□□□ 0.7
Msh3P13705 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Gm20760-201ENSMUST00000179197 648 ntBASIC19.45■□□□□ 0.7
Msh3P13705 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Msh3P13705 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Msh3P13705 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.45■□□□□ 0.7
Msh3P13705 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Msh3P13705 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.45■□□□□ 0.7
Msh3P13705 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msh3P13705 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.44■□□□□ 0.7
Msh3P13705 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Msh3P13705 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.44■□□□□ 0.7
Msh3P13705 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Msh3P13705 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.44■□□□□ 0.7
Msh3P13705 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.44■□□□□ 0.7
Msh3P13705 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msh3P13705 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.44■□□□□ 0.7
Msh3P13705 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms