Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.15■□□□□ 0.66
RaraP11416 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.15■□□□□ 0.66
RaraP11416 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.15■□□□□ 0.66
RaraP11416 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RaraP11416 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RaraP11416 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.14■□□□□ 0.65
RaraP11416 Gm2399-201ENSMUST00000104944 225 ntBASIC19.14■□□□□ 0.65
RaraP11416 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RaraP11416 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RaraP11416 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RaraP11416 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RaraP11416 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RaraP11416 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RaraP11416 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
RaraP11416 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Gm13148-201ENSMUST00000118892 745 ntBASIC19.13■□□□□ 0.65
RaraP11416 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
RaraP11416 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Zfp783-201ENSMUST00000095946 670 ntBASIC19.13■□□□□ 0.65
RaraP11416 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RaraP11416 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
RaraP11416 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.13■□□□□ 0.65
RaraP11416 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RaraP11416 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
RaraP11416 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
RaraP11416 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RaraP11416 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RaraP11416 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.12■□□□□ 0.65
RaraP11416 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Gm44549-201ENSMUST00000208351 577 ntBASIC19.12■□□□□ 0.65
RaraP11416 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RaraP11416 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RaraP11416 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RaraP11416 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RaraP11416 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
RaraP11416 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.11■□□□□ 0.65
RaraP11416 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.11■□□□□ 0.65
RaraP11416 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.11■□□□□ 0.65
RaraP11416 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RaraP11416 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
RaraP11416 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.1■□□□□ 0.65
RaraP11416 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.1■□□□□ 0.65
RaraP11416 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.1■□□□□ 0.65
RaraP11416 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.1■□□□□ 0.65
RaraP11416 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.1■□□□□ 0.65
RaraP11416 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
RaraP11416 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.1■□□□□ 0.65
RaraP11416 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RaraP11416 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RaraP11416 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms