Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.36■□□□□ 0.37
Chd3B1AR17 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Chd3B1AR17 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.36■□□□□ 0.37
Chd3B1AR17 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chd3B1AR17 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Chd3B1AR17 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
Chd3B1AR17 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Chd3B1AR17 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Chd3B1AR17 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chd3B1AR17 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.34■□□□□ 0.37
Chd3B1AR17 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.34■□□□□ 0.37
Chd3B1AR17 Gm4974-201ENSMUST00000209974 875 ntBASIC17.34■□□□□ 0.37
Chd3B1AR17 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chd3B1AR17 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Chd3B1AR17 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Chd3B1AR17 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.33■□□□□ 0.37
Chd3B1AR17 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.33■□□□□ 0.37
Chd3B1AR17 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.33■□□□□ 0.37
Chd3B1AR17 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Chd3B1AR17 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chd3B1AR17 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chd3B1AR17 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.33■□□□□ 0.37
Chd3B1AR17 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chd3B1AR17 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chd3B1AR17 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Chd3B1AR17 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC17.33■□□□□ 0.36
Chd3B1AR17 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.33■□□□□ 0.36
Chd3B1AR17 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chd3B1AR17 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.32■□□□□ 0.36
Chd3B1AR17 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.32■□□□□ 0.36
Chd3B1AR17 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.32■□□□□ 0.36
Chd3B1AR17 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Chd3B1AR17 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC17.32■□□□□ 0.36
Chd3B1AR17 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
Chd3B1AR17 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Gm10517-202ENSMUST00000192970 758 ntBASIC17.32■□□□□ 0.36
Chd3B1AR17 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Chd3B1AR17 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chd3B1AR17 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chd3B1AR17 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.31■□□□□ 0.36
Chd3B1AR17 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
Chd3B1AR17 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chd3B1AR17 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chd3B1AR17 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Chd3B1AR17 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chd3B1AR17 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chd3B1AR17 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms